PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000843
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 277aa    MW: 31288.1 Da    PI: 4.6962
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000843genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+  +   G  +W+++++  g++R++k+c++rw +yl
      DCAR_000843 14 KGPWTADEDKKLISFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.32.7e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T  E++l +d++++lG++ W++Ia +++ gRt++++k++w+++
      DCAR_000843  70 LTDAEEQLVIDLHARLGNR-WSKIAGRLP-GRTDNEIKNHWNTH 111
                      5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.332961IPR017930Myb domain
SuperFamilySSF466893.14E-2611108IPR009057Homeodomain-like
SMARTSM007175.8E-121363IPR001005SANT/Myb domain
PfamPF002493.9E-141461IPR001005SANT/Myb domain
CDDcd001671.41E-81661No hitNo description
PROSITE profilePS5129426.90162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2463117IPR009057Homeodomain-like
SMARTSM007173.2E-1466114IPR001005SANT/Myb domain
PfamPF002493.6E-1470111IPR001005SANT/Myb domain
CDDcd001673.68E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAD EDKKLISFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL TDAEEQLVID LHARLGNRWS KIAGRLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLQ KEETNSQVEN LSQQFQSPAE TEHQVPPVQH TNDMASSETS CTPTDQNSSG  180
DESNSLSAIC DQIDDSLISY LFEDDTPGLV DAPWEFSAVA KENFNKVDMV LPSWDESCPW  240
LLDCQDFGIQ DFGFDCFNDI EMNMLNQLDV KNDQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1617112e-62AF161711.1 Pimpinella brachycarpa myb-related transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217370.10.0PREDICTED: protein ODORANT1
SwissprotQ50EX61e-110ODO1_PETHY; Protein ODORANT1
TrEMBLA0A166FXF80.0A0A166FXF8_DAUCS; Uncharacterized protein
STRINGVIT_00s1241g00010.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-99myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]