PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000813

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 356aa MW: 40057.8 Da PI: 7.4944

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000813	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.5	1.3e-13	260	306	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++++d+ yF+l +AAk Lg+++T LK i R+ GI+ WP R ++ DCAR_000813 260 TLTIQDVLPYFHLRQSEAAKLLGLGTTKLKEIVRNAGIPKWPAREVN 306 78999***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.663	242	329	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-14	260	306	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MKGRKKRTPK KRAPSHNDPH GETGTTDNVV RPNEFVDVSV NDFEQPGGDD IMFNAGGDAD 60 DPSRWEYQSE YVHNPFGAGP SGVNNQRGSS GVNNQRSEQN TVISDPGNSA FENPTQFFEW 120 PDPPRQYDCT YCQVLRYIVH IKGQEQSTKL EIHGRIGMVC HGILEISSGD TTAPNREYRT 180 FDFCQKSLSD VKKFLIEYYE DRANTSYATV DDPLLTFYDT LCARSEYDWV FNNDNEAEAQ 240 GGGVRPKKRT VVEQRAYCET LTIQDVLPYF HLRQSEAAKL LGLGTTKLKE IVRNAGIPKW 300 PAREVNAKDR AIKKIVKKMN PSNPRKKAMA EKEIQELQKA IADIYAPLQK KNAAG*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MKGRKKRTPK KRAPSHNDPH GETGTTDNVV RPNEFVDVSV NDFEQPGGDD IMFNAGGDAD  60
DPSRWEYQSE YVHNPFGAGP SGVNNQRGSS GVNNQRSEQN TVISDPGNSA FENPTQFFEW  120
PDPPRQYDCT YCQVLRYIVH IKGQEQSTKL EIHGRIGMVC HGILEISSGD TTAPNREYRT  180
FDFCQKSLSD VKKFLIEYYE DRANTSYATV DDPLLTFYDT LCARSEYDWV FNNDNEAEAQ  240
GGGVRPKKRT VVEQRAYCET LTIQDVLPYF HLRQSEAAKL LGLGTTKLKE IVRNAGIPKW  300
PAREVNAKDR AIKKIVKKMN PSNPRKKAMA EKEIQELQKA IADIYAPLQK KNAAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244597.1	0.0	PREDICTED: uncharacterized protein LOC108216354
TrEMBL	A0A166FT65	0.0	A0A166FT65_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Link Out ? help Back to Top
Phytozome	DCAR_000813