PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28513.8 Da PI: 7.4583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.8e-10 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ede+l ++++ +G+g ++R++k+c++rw++yl DCAR_000774 14 RGPWSPHEDEILRNYIRNHGTG----------LKRCGKSCRLRWLNYL 51 89********************..........68************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.8e-15 | 58 | 100 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd ++ + lG++ W+ Ia++++ gRt++++k++w++ DCAR_000774 58 GSFTPEEDNIIFTLYSNLGSR-WSVIASKLP-GRTDNDVKNHWNT 100 79*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-17 | 5 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.776 | 9 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-24 | 12 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-5 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-8 | 14 | 51 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.176 | 52 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-25 | 55 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 58 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-11 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRAPCCDKS KVKRGPWSPH EDEILRNYIR NHGTGLKRCG KSCRLRWLNY LRPDIKHGSF 60 TPEEDNIIFT LYSNLGSRWS VIASKLPGRT DNDVKNHWNT KLKKKLQATT DSYFTKINQT 120 PPGSTSAPST TATIITPSME SNYTLEFSTA IQDHGFLPEM PSLVNAVNYT QTGNYTAQDY 180 SSIPDSSIVL DKNTCDFVMD FGLGFAYDQM MSTGISNNNQ EQMSFEEALI NYPTSSYANS 240 AVCHNASSQF YGNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 106 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017230030.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A166FRZ4 | 0.0 | A0A166FRZ4_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0006s25060.1 | 6e-61 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-57 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000774 |