PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 25971.8 Da PI: 4.9423 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.2e-17 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g++v+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g DCAR_000752 58 SVYHGVRMRN-WGKYVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALCIKG 108 68*****998.**********843...6************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.92E-31 | 58 | 118 | No hit | No description |
Pfam | PF00847 | 6.2E-11 | 58 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 58 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.483 | 59 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-35 | 59 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 59 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-9 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-9 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTASNSEPES SSNSFSSSPQ SPSSPGSTHF VKSCLESDKS LSDSSKKPKR IRHGNKHSVY 60 HGVRMRNWGK YVSEIREPRK KSRIWLGTFS TPEMAARAHD VAALCIKGSS AILNFPELAN 120 LLPRPASNSP RDVQAAAVKA AAMDQFDSTP PSLSPSSSST LSSSNSLSSL VLAIDLSAAS 180 DELTEIIELP SLETGFDSVE MMNNDFVFDD SVEMGWCYPS PWSMENAEND TGEFSFPFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-20 | 54 | 121 | 9 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216231.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 8e-61 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A162AZJ8 | 1e-172 | A0A162AZJ8_DAUCS; Uncharacterized protein | ||||
STRING | EOY29748 | 4e-69 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000752 |
Publications ? help Back to Top | |||
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