PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000653
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 530aa    MW: 58273.4 Da    PI: 6.6664
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000653genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.32.8e-15741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp+ ++ LCnaCG ++r kg+
  DCAR_000653  7 CCHCGVTSTPLWRNGPEEKPVLCNACGSRWRTKGS 41
                 99**************99999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-11644No hitNo description
CDDcd002026.80E-17655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.701761IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.6E-13741IPR000679Zinc finger, GATA-type
PfamPF139191.5E-9289380IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVKQGPCCHC GVTSTPLWRN GPEEKPVLCN ACGSRWRTKG SLTNYRPLHL RAEPPEIIDY  60
RVQRMKGLSI NHKEAKVLKR KQNHDAEVAA KVAPDHGFHK GARDALDYNP GYFKTLAEDF  120
SNRSSSGSAI SNSESCVHLG SADANDLTGA PQSIVWDSVV PSRKRTCVRA KPSPVEKLTT  180
DLYAILQEQT YLSGSTEEDL LLECDTPTVS VEIGHGSVLI RHPSSIAREE ESEASSLSVS  240
NKPCPANEAC SQFTTLCNRT LNKFGNVSSA EIKKKGPTGQ EMEQELYKRK KGQQEKLEIL  300
ENHKSPLSSI DLKDVINFEE FGKHVTNFEW QELLKLLPSV DTVELPNSLR TMFNSLQFKE  360
SLSTFQKLLA DGVFDLSSSE VNSEFNRSLK RLVLCNLTKS NWVEEYNLLK DTKCKSSFDS  420
SSIARGNAAV APAQSPNTQR SCDSEPPNLP GSKKAVNASY DNEAPLFGPK ILLEAPRDSN  480
SLMHDCFHFS AESSDHDLLL NIPSHSSFPQ AELLLPNAGF GAQASTTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272290KKKGPTGQEMEQELYKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230649.10.0PREDICTED: GATA transcription factor 26-like
TrEMBLA0A166FNH50.0A0A166FNH5_DAUCS; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-112GATA transcription factor 26