PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NF-YC | ||||||||
Protein Properties | Length: 114aa MW: 12506.5 Da PI: 6.5318 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 111.5 | 4.7e-35 | 19 | 101 | 19 | 100 |
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 h lPlarikki+k +++dvkmis eaP+++skacelfi elt rsw+ + ++krrtl+k d+aaav t+ifdflv iv d+ DCAR_000599 19 HLLPLARIKKIMKkSNDDVKMISGEAPIVFSKACELFIEELTKRSWNMTMQAKRRTLHKEDVAAAVVATEIFDFLVPIVSVDD 101 789*********736899**********************************************************9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.4E-26 | 18 | 93 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.8E-32 | 21 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.6E-22 | 21 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MRKPGAYSGL LSGSISGPHL LPLARIKKIM KKSNDDVKMI SGEAPIVFSK ACELFIEELT 60 KRSWNMTMQA KRRTLHKEDV AAAVVATEIF DFLVPIVSVD DDGEDGIEKK EES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-33 | 19 | 97 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017223091.1 | 4e-78 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 3e-32 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A166FLZ6 | 9e-77 | A0A166FLZ6_DAUCS; Uncharacterized protein | ||||
STRING | XP_009785550.1 | 8e-54 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12881 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 4e-34 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000599 |