PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000583

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 601aa MW: 66885 Da PI: 5.1032

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000583	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	380	434	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+e+He Fveav++LGGse+AtPk +l+ mkv+gLt++hvkSHLQkYR+ DCAR_000583 380 KSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRT 434 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.127	377	437	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-17	378	434	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-29	378	435	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-24	380	435	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-7	384	433	IPR001005	SANT/Myb domain
Pfam	PF14379	6.2E-21	466	511	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MDAQPFLSFH RSGGRQSSNH ESIGVPSSCL PSLATVQEEK YPKLLNNQLV SVERELMSSP 60 SDLVPLSYNN GTVGHIFSGF SKESHFSIAS PHEKHSETFI SQTANAETSL LVQDTSAGIS 120 ENLQFCNASP HEKYSENGSF FSQTSVIVHN SCHQVPGVQS TSSTCYTKEN DSWCSDMLPE 180 FIDYPMTAEG NNYTEGGKVS SPVGLSEDCS MSSDLLDQLL NNNDALTSNW DHFENNCFTN 240 SELQFPYHVP AISIDDTVQM HQVHQQPLVH QHSQPQVYEN FPSASKEICT TQSTSDTVQQ 300 LQVQQQPLVL HKSQIHEQLA HASEEICTTP SMGCTLQLAQ VQQQLQAFQQ SQVQRQIPLA 360 SSKISMSGNQ LSSTSSTSNK SRIRWTSEMH ETFVEAVNKL GGSERATPKG VLKQMKVEGL 420 TIYHVKSHLQ KYRTTRYKPE SLEGSSDKNQ NLLGVMSSHD LKKDSEITET LRMQMELQKK 480 LHEQLEIQKN LQLRLEEQGR CLKMMFEKQQ ESGTDNPSAQ STVGIGNNHA QDGPKTTHMQ 540 HQVIRLSPDD VDEELEVIEG GSEKFKDART EPETETSKDP WADVTGGCDV QPENHVILID 600 *

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MDAQPFLSFH RSGGRQSSNH ESIGVPSSCL PSLATVQEEK YPKLLNNQLV SVERELMSSP  60
SDLVPLSYNN GTVGHIFSGF SKESHFSIAS PHEKHSETFI SQTANAETSL LVQDTSAGIS  120
ENLQFCNASP HEKYSENGSF FSQTSVIVHN SCHQVPGVQS TSSTCYTKEN DSWCSDMLPE  180
FIDYPMTAEG NNYTEGGKVS SPVGLSEDCS MSSDLLDQLL NNNDALTSNW DHFENNCFTN  240
SELQFPYHVP AISIDDTVQM HQVHQQPLVH QHSQPQVYEN FPSASKEICT TQSTSDTVQQ  300
LQVQQQPLVL HKSQIHEQLA HASEEICTTP SMGCTLQLAQ VQQQLQAFQQ SQVQRQIPLA  360
SSKISMSGNQ LSSTSSTSNK SRIRWTSEMH ETFVEAVNKL GGSERATPKG VLKQMKVEGL  420
TIYHVKSHLQ KYRTTRYKPE SLEGSSDKNQ NLLGVMSSHD LKKDSEITET LRMQMELQKK  480
LHEQLEIQKN LQLRLEEQGR CLKMMFEKQQ ESGTDNPSAQ STVGIGNNHA QDGPKTTHMQ  540
HQVIRLSPDD VDEELEVIEG GSEKFKDART EPETETSKDP WADVTGGCDV QPENHVILID  600
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-28	380	438	2	60	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244069.1	0.0	PREDICTED: uncharacterized protein LOC108215938
TrEMBL	A0A166FLG7	0.0	A0A166FLG7_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	3e-55	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	DCAR_000583