PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000322
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 405aa    MW: 44345.7 Da    PI: 9.0112
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000322genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC62.56.4e-20100140141
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 
                  d++ grCrRtDGKkWRCsr+++++ k+C+rH +r+rsr+  
  DCAR_000322 100 DPDLGRCRRTDGKKWRCSREAVADRKYCDRHTKRSRSRKPV 140
                  6899*******************************999865 PP
2QLQ62.51.1e-213268137
          QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 ++FT++Q+++L++Q+l+yKy+ an PvP++Ll +i+k
  DCAR_000322 32 GPFTPSQWMELEHQALIYKYMTANYPVPSNLLNPIKK 68
                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-123268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-153366IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.1653368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.315100144IPR014977WRC domain
PfamPF088792.2E-16101138IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MFQLKTDTIW ELFISGPVSG GLYGGISTGV KGPFTPSQWM ELEHQALIYK YMTANYPVPS  60
NLLNPIKKAM ESARFSSSLG ANLRPVEWGA FHLGFPNNAD PDLGRCRRTD GKKWRCSREA  120
VADRKYCDRH TKRSRSRKPV EGQTGHNVSG TTNTTTKSPP MSSSTSAALV VPASDTFNNF  180
GLSGNRLQQG TPNPTTSPHP KRRSVNIHEE VKEMEGLPMK RPVNTLNESG FLNIKHIPYQ  240
ESSTMDFGLQ CSDSMLNPFQ KAPSLIKGKS YRSSAELDKD KYRSEHSLGQ FMGDWMKCQS  300
EPQAIPWPET DAQLDRTRLS ISLPVGAADF ISSTSSLTNE NLVCSPIRLS CNLGSAHAGS  360
EMNTFIKDTN QRHANWGTSA GGPLGEVLHS SNNSASDSQN SISP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123138RKYCDRHTKRSRSRKP
2131136KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214746.11e-138PREDICTED: growth-regulating factor 1-like
TrEMBLA0A175Y9J10.0A0A175Y9J1_DAUCS; Uncharacterized protein
STRINGEOY156571e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-50growth-regulating factor 1