PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048817m
Common NameCISIN_1g048817mg, LOC102626453
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 614aa    MW: 68135.5 Da    PI: 6.2676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048817mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13444490455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  orange1.1g048817m 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 490
                        799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5652240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-15443494No hitNo description
SuperFamilySSF474591.03E-18443510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-19444507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00608551595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MKIEFNMGGN LWNDEDKAMG AAVLGTRAFD YLLTSSISNE NLLMAVGSDE DLQNKLSDLV  60
DRPNASNFSW NYAIFWQISR SKSGDWVLGW GDGSCREPKE GEESEATRIP NIRLEDETQQ  120
RMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH  180
VWLLDALKLS SDYCVRSFLA KSARIQTIVL ISTDAGVVEL GSVRSVPESL ELVHSIRATF  240
SSNSSLATVK PMAVALPVTS EKKDENGLFP NLGILDRVEG VPKIFGQELN NSGHVHTPFS  300
REKLAVRKME ERPSWEAYTN GNRTAFPGIR NGVHGFSWGN VQGVKQGIAT EIFGSQTNNL  360
QELVNGVRED FRINHYQSQK PMQMQIDFSG ATSRPNVIAR PLNADSEHSD VEASCRDERT  420
GTVEERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAIAYINELQ AKLKVMEAER ENLSGNSRDL SAFESNPNVE SQNRAPDVDI QAAHDEVVVR  540
VSCPLDSHPA SRVIQAFKDA QITVVESKLS TGNDMVFHTF VIKSQGSEQL TKEKLIAAFS  600
CESSSIQPLS SVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29438500264Transcription factor MYC2
5gnj_B2e-29438500264Transcription factor MYC2
5gnj_E2e-29438500264Transcription factor MYC2
5gnj_F2e-29438500264Transcription factor MYC2
5gnj_G2e-29438500264Transcription factor MYC2
5gnj_I2e-29438500264Transcription factor MYC2
5gnj_M2e-29438500264Transcription factor MYC2
5gnj_N2e-29438500264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425433RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.41210.0fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491293.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A067H3Q90.0A0A067H3Q9_CITSI; Uncharacterized protein
STRINGXP_006491293.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]