PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048771m
Common NameCISIN_1g048771mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 815aa    MW: 89651.8 Da    PI: 6.6639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048771mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181775357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  orange1.1g048771m 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                       5679*****************************************************97 PP
2START34.55e-12161227269
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCG CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddk 69 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+
  orange1.1g048771m 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDR 227
                        789*******************************************************.778877775 PP
3START104.12.3e-3323434598205
                        XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
              START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                        l+al++l+p Rdf+ +Ry+  l++g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  orange1.1g048771m 234 LYALTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 325
                        6899********************************99999988899********************************************* PP

                        HHHHHHHHHHHHHHTXXXXX CS
              START 186 ksglaegaktwvatlqrqce 205
                        +s+++ ++kt++a+l+++++
  orange1.1g048771m 326 ESSTVLAQKTTMAALRQLRQ 345
                        ***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466893.46E-171680IPR009057Homeodomain-like
CDDcd000868.87E-171777No hitNo description
PfamPF000462.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.11E-669108No hitNo description
PROSITE profilePS5084818.796158355IPR002913START domain
SMARTSM002348.2E-26160346IPR002913START domain
SuperFamilySSF559611.65E-30160348No hitNo description
Gene3DG3DSA:3.30.530.202.1E-16161343IPR023393START-like domain
PfamPF018522.0E-9161228IPR002913START domain
PfamPF018523.1E-30234345IPR002913START domain
SuperFamilySSF559614.07E-5373465No hitNo description
SuperFamilySSF559614.07E-5497572No hitNo description
PfamPF086706.9E-52671813IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MAMSCKDGKT GSLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQSTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSVGIVAISH GCSGVAARAC GLVGLEPTRV AEILKDRPRG SAILYALTTL  240
APARDFWLLR YTSVLEDGSL VVCERSLKNI QNGPTMPPVQ HFVRAEMLPS GYLIRPCEGG  300
GSIIHIVDHM DLEPWSVPEV LRPLYESSTV LAQKTTMAAL RQLRQMAQEV TQSSVNGWGR  360
RPAALRALSQ RLSRGFNEAV NGFTDEGWTV MGNDGMDDVT VLVNSSPDKL MGLNLSFANG  420
FPAVSNAVLC AKASMLLQNV PPAILLRFLR EHRSEWADNN IDVYSAAAIK VGPCSLPGSR  480
VGTFGSQVIL PLAHTIEHEE FMEVIKLEGV GHSPEDAIMP RDMFLLQLCS GMDENAVGTC  540
AELIFAPIDA SFADDAPLLP SGFRIIPLDS GKETSSPNRT LDLASALEIG PAGNRATNNY  600
STNSTCMRSV MTIAFEFAFE SHMQEHVATM ARQYVRSIIS SVQRVALALS PSNISSQAGL  660
RTPLGTPEAL TLARWICHSY RCYLGVDLLK SSSEGSESIL KNLWHHTDAV MCCSLKALPV  720
FTFANQAGLD MLETTLVALQ DITLEKIFDD HGRKALFAEF PQIMQQGFAC LQGGICLSSM  780
GRPVSYERAV AWKVLNEEET AHCICFMFIN WSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10790.0callus| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426893.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_006465680.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_015386901.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A067ED210.0A0A067ED21_CITSI; Uncharacterized protein
STRINGXP_006465679.10.0(Citrus sinensis)
STRINGXP_006426892.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]