PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048741m
Common NameCISIN_1g048741mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 315aa    MW: 34656.1 Da    PI: 8.2113
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048741mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.3e-3280137260
        ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                        + v+YkeClkNhAa +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e e
  orange1.1g048741m  80 KMVKYKECLKNHAAGMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEGE 137
                        6799*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2682137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.7E-2982134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-3183134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24384133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.8E-29238303IPR009057Homeodomain-like
SuperFamilySSF466891.22E-18240302IPR009057Homeodomain-like
TIGRFAMsTIGR015654.3E-27241297IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MELSSQDGEI PIPINSAYGG GGHGHMIHHD HHHHHHAPHD NIIPVASSAP QISPINGPPI  60
PISTNLEDQQ NGSTINVNKK MVKYKECLKN HAAGMGGNAT DGCGEFMPSG EEGTIEALTC  120
SACNCHRNFH RKEIEGEQQQ QAAINPFDYY HHHMNPHFNR VGRKVILGHH KNILAATPEA  180
LGYPTPTGTL ISSRPVGGGP TPHQMIMSYN MGSIPSESDE HEDGIGGGVV MAARPTAQLV  240
KKRFRTKFTQ EQKEKMFNFA EKVGWKIQKQ EESVVQQFCQ EIGVKRRVLK VWMHNNKHNL  300
AKKNNINPPS TTTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232422991875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5921811e-54EF592181.1 Mangifera indica clone MiIIHR01 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431432.10.0zinc-finger homeodomain protein 4
RefseqXP_006470838.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-80ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A067DTZ00.0A0A067DTZ0_CITSI; Uncharacterized protein
STRINGXP_006470838.10.0(Citrus sinensis)
STRINGXP_006431432.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-72homeobox protein 31