PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048697m
Common NameCISIN_1g048697mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19569.5 Da    PI: 9.4731
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048697mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.9e-131454949
                       HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +tfskRr  i K A+EL +L++ e+a+++fs++gk y++
  orange1.1g048697m 14 MIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTF 54
                       568*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-11757IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-16873IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151654IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8861658IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-62035IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-63556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAAKKTKGRQ KIEMIITFSK RRSWIYKNAS ELVTLTGSEI AIVVFSQSGK PYTFGHPSVE  60
AVANRFLGMN QLPNDNIHSL VVGHRQVRIN ELNQQHNELR RQLDEEKEQE KILTQMRRGK  120
ETQPRMWETP VDEHNLQEQL QMDSAFMLGE LDLLWKPQLS KYIIEPAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421334.15e-84agamous-like MADS-box protein AGL62
TrEMBLA0A067EBD71e-121A0A067EBD7_CITSI; Uncharacterized protein
STRINGXP_006421331.11e-104(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29AGAMOUS-like 62