PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g048452m

Common Name

CISIN_1g048452mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 190aa MW: 20949.3 Da PI: 11.1176

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g048452m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.8	5.9e-29	35	90	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+ eLH+ F++a+++LGGse+AtPk i+++m+v+gLt++++kSHLQkYR + orange1.1g048452m 35 KQRRSWSAELHQLFLQALSHLGGSEVATPKLIKKIMNVDGLTNDEIKSHLQKYRAH 90 79****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.284	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-25	33	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	33	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-25	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	37	88	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNLGFYNSMS NGRQPNLHSR LQNLQKRRRW LNRKKQRRSW SAELHQLFLQ ALSHLGGSEV 60 ATPKLIKKIM NVDGLTNDEI KSHLQKYRAH LRSPSNNSSS GQDNHPRIAN VQVGNSSNSS 120 ILQCGSSKSQ IHVPSSSANT ISMSGGNRVV AEEDARSDGH SWNSAVSSTY AMNFAQTDLS 180 GNQPINIKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	35	88	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	35	88	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	35	88	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	35	88	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	35	88	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425832.2	1e-134	transcription factor HHO5
Refseq	XP_006466649.2	1e-134	transcription factor HHO5
TrEMBL	A0A067GVH7	1e-135	A0A067GVH7_CITSI; Uncharacterized protein
STRING	XP_006466649.1	1e-134	(Citrus sinensis)
STRING	XP_006425832.1	1e-135	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33235	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-23	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g048452m