PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g048225m | ||||||||
Common Name | CISIN_1g048225mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14756.7 Da PI: 5.9967 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.5e-14 | 20 | 101 | 9 | 96 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++l+ + l++ +k +++++++ s ++ + ++g +W+vkl +k ++ + + +GW++Fv+a + +g v+F+++++s+f+ + + orange1.1g048225m 20 STLRDQKLRILNKIVRKISHE--LSDMVHIIVPNGYVWQVKL--NKEGRNVRFDDGWQDFVEAYSISVGSLVLFEYESNSTFQAH--I 101 566777899999***999755..8889***************..********************************999999544..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-18 | 10 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.48E-11 | 11 | 103 | No hit | No description |
SuperFamily | SSF101936 | 1.28E-17 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.42 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-11 | 20 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
PILPSLPEIP PRFVKARLLS TLRDQKLRIL NKIVRKISHE LSDMVHIIVP NGYVWQVKLN 60 KEGRNVRFDD GWQDFVEAYS ISVGSLVLFE YESNSTFQAH IYDETAWEIN YPSSDKESHT 120 SGEEFHP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024041320.1 | 7e-89 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A067EKN7 | 9e-89 | A0A067EKN7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006494014.1 | 1e-68 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g048225m |