PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g048159m

Common Name

CISIN_1g048159mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TALE

Protein Properties

Length: 841aa MW: 92471 Da PI: 7.1848

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g048159m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	643	680	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + orange1.1g048159m 643 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 680 564459******************************87 PP
2	BELL	93.7	1.7e-30	496	565	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+ +akLl l+eeV krYk y++qlq+v+ssFe vagl a+pY+slA kaiS++FrcLk ai++q+ orange1.1g048159m 496 PEYQEMRAKLLYLQEEVSKRYKLYHQQLQMVVSSFESVAGLSGATPYVSLAFKAISKNFRCLKSAIMNQL 565 6889999************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-37	395	563	IPR006563	POX domain
Pfam	PF07526	8.3E-40	400	561	IPR006563	POX domain
PROSITE profile	PS50071	11.855	621	684	IPR001356	Homeobox domain
CDD	cd00086	4.63E-11	624	685	No hit	No description
SMART	SM00389	1.8E-8	624	688	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-17	626	692	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	627	688	IPR009057	Homeodomain-like
Pfam	PF05920	4.0E-18	641	680	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MDMNNFRPQS SHVAQQSRRD KLRIQQHLED LSEHSNLEQS SSVNVRNGIS FYDSSTTLVS 60 SSELINFSAN SSALTAQREA MGHQELSDSH HQHDQHSNTS RPIMTGGDLF TILPHTAVAS 120 SHHFRATGDH FQGCCDLKGL DHSQSISEWM VNYASGSSGR ESNQNVMLDG EVVSNNSNST 180 SRKILRPNNY NEYQDHVQST SVNQPSEKLF GDMHYATPIF PNTVQDVVTL ASVGTHGLEV 240 ASLLQQSNAR ETGHVTWTDH SGNELVLLPS YGNQTSAIRY SDPSNWTSRP AAESFHQWST 300 ESGLRNVASD AATQGLSLSL SSNPPSDEMN AGHFAGGYES QNLHFKTDSR SGNSSLLGSF 360 PKPSIIRKGS GKSVQDMGTS SYNVHRNTGP LGPFTGYATI LKNSRFLKPA QELLDEFCCV 420 KKSKYGRRGN VSERFSGDRA SASASAEADA ADVADREVGA KGKNSTSRVS SPTFYSSNQI 480 SCEGGVGSSS GESHRPEYQE MRAKLLYLQE EVSKRYKLYH QQLQMVVSSF ESVAGLSGAT 540 PYVSLAFKAI SKNFRCLKSA IMNQLKHVAK ALGEEMRSSA TVTSSSRGHI TNTSAKLNCL 600 DQILQKHKSG GANVGFLEPQ QHVWRPQRGL PERAVAILRA WLFEHFLHPY PTDTDKHMLA 660 TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLETQGSVAT NQDFKTKTDG QSLSDGTAGS 720 SFNGDQPMND KLAISAMSDE HMDYSGIGSS RSNNEEGLNA EHWNQEKRSR VDSNHRLTTS 780 MDRSLMGFIP YQRNMIEVGG LSAVSLTLGL RHGVESSPQQ QQEDQLRRQY GGQMIHDFAG 840 *

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MDMNNFRPQS SHVAQQSRRD KLRIQQHLED LSEHSNLEQS SSVNVRNGIS FYDSSTTLVS  60
SSELINFSAN SSALTAQREA MGHQELSDSH HQHDQHSNTS RPIMTGGDLF TILPHTAVAS  120
SHHFRATGDH FQGCCDLKGL DHSQSISEWM VNYASGSSGR ESNQNVMLDG EVVSNNSNST  180
SRKILRPNNY NEYQDHVQST SVNQPSEKLF GDMHYATPIF PNTVQDVVTL ASVGTHGLEV  240
ASLLQQSNAR ETGHVTWTDH SGNELVLLPS YGNQTSAIRY SDPSNWTSRP AAESFHQWST  300
ESGLRNVASD AATQGLSLSL SSNPPSDEMN AGHFAGGYES QNLHFKTDSR SGNSSLLGSF  360
PKPSIIRKGS GKSVQDMGTS SYNVHRNTGP LGPFTGYATI LKNSRFLKPA QELLDEFCCV  420
KKSKYGRRGN VSERFSGDRA SASASAEADA ADVADREVGA KGKNSTSRVS SPTFYSSNQI  480
SCEGGVGSSS GESHRPEYQE MRAKLLYLQE EVSKRYKLYH QQLQMVVSSF ESVAGLSGAT  540
PYVSLAFKAI SKNFRCLKSA IMNQLKHVAK ALGEEMRSSA TVTSSSRGHI TNTSAKLNCL  600
DQILQKHKSG GANVGFLEPQ QHVWRPQRGL PERAVAILRA WLFEHFLHPY PTDTDKHMLA  660
TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLETQGSVAT NQDFKTKTDG QSLSDGTAGS  720
SFNGDQPMND KLAISAMSDE HMDYSGIGSS RSNNEEGLNA EHWNQEKRSR VDSNHRLTTS  780
MDRSLMGFIP YQRNMIEVGG LSAVSLTLGL RHGVESSPQQ QQEDQLRRQY GGQMIHDFAG  840
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-16	630	687	1	58	Homeobox protein Meis1
4xrs_B	4e-16	630	687	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488058.1	0.0	BEL1-like homeodomain protein 9
Refseq	XP_024957472.1	0.0	BEL1-like homeodomain protein 9
TrEMBL	A0A067EYN5	0.0	A0A067EYN5_CITSI; Uncharacterized protein
STRING	XP_006488058.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14321	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	4e-69	BEL1-like homeodomain 8

Link Out ? help Back to Top
Phytozome	orange1.1g048159m