PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047986m | ||||||||
Common Name | CISIN_1g047986mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 135aa MW: 15215.3 Da PI: 5.6679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32 | 2.1e-10 | 1 | 24 | 33 | 56 |
HHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRakek 56 LA++lgL+ rq+ vW+qNrRa+ek orange1.1g047986m 1 LARRLGLPPRQIAVWYQNRRAREK 24 89********************99 PP | |||||||
2 | HD-ZIP_I/II | 69 | 1e-22 | 1 | 62 | 32 | 93 |
HD-ZIP_I/II 32 lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 lar+Lgl prq+avW+qnrRAR k + +E dy+++++++d++ +en++Le+ev L++elk+ orange1.1g047986m 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 89********************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-8 | 1 | 35 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 1 | 24 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50071 | 11.774 | 1 | 26 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.65E-8 | 1 | 26 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.5E-8 | 1 | 24 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
LARRLGLPPR QIAVWYQNRR AREKIHTIEL DYKTIQQELD NVLAENRKLE QEVGMLKHEL 60 KKSQQMLLAS NPSATLLPSV STSGDNDLTS SSSPLNMTCN WEDTGLLPMD ELYSCLIRPQ 120 GQPENHSMND LSIV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446710.1 | 7e-94 | homeobox-leucine zipper protein ATHB-52 | ||||
Refseq | XP_006469078.1 | 7e-94 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2H5PT84 | 4e-94 | A0A2H5PT84_CITUN; Uncharacterized protein | ||||
STRING | XP_006469078.1 | 3e-93 | (Citrus sinensis) | ||||
STRING | XP_006446710.1 | 3e-93 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22993 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 6e-19 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047986m |