PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047950m
Common NameCISIN_1g047950mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 318aa    MW: 34729.1 Da    PI: 10.0898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047950mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20156205255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  orange1.1g047950m 156 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 205
                        59*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.93E-17155214No hitNo description
PROSITE profilePS5103222.932156213IPR001471AP2/ERF domain
PfamPF008473.6E-14156205IPR001471AP2/ERF domain
SMARTSM003802.6E-33156219IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21156213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-29156213IPR001471AP2/ERF domain
PRINTSPR003671.4E-10157168IPR001471AP2/ERF domain
PRINTSPR003671.4E-10179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQKSTFHTTT VPFFSMPDTF QTPETFRFFT ETQSLCGPIF NSNLSFPSLP ALNYLNPPHY  60
FPYLTDVSVD SSLSDSETKT ESPVFLSENK KKAVTETETD AAAPPVLDGI AAVVGLNVLF  120
GTKTNPTKKT ETPDAVEENI GSPRKNDNNT IPVQKNYRGV RKRPWGRWSA EIRDRIGRCR  180
HWLGTFDTAE EAARAYDAAA RRLRGSKART NFEIPSVLPL IATPCLSPSS SGEVKKAKGK  240
VINSNSSGRR NKCSVVTSMA HLFSNNAISF NNNGFDHHQA KRNAKAKDTN TLELDLKLGV  300
GLAAKRNTAA SAPSMAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17155214161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465281.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A067DJU70.0A0A067DJU7_CITSI; Uncharacterized protein
STRINGXP_006465281.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-30ERF family protein