PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047949m
Common NameCISIN_1g047949mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 389aa    MW: 44191.9 Da    PI: 6.8562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047949mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.21.3e-3551323128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +GfrF Ptdee++ + Lk k  +  +++ ++ike+d y +ePw+Lp  +++++ee+ wyfF++ d kya++kr nr tk+g+Wk+tg+  ++
  orange1.1g047949m   5 VGFRFYPTDEEII-CLLKMKRLDPGFSV-RTIKEIDFYGFEPWELPchSEIQSEEEVWYFFCEPDYKYAKSKRVNRGTKEGTWKKTGNGSKI 94 
                        7************.88999999999999.88***************6448888999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++k ++e++g+k++L f +  +a+k  kt+Wvmhe ++
  orange1.1g047949m  95 KRKySTEVIGTKRILSFSRHdSASKKAKTEWVMHEIAV 132
                        *9988899**********764888999********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.693150IPR003441NAC domain
SuperFamilySSF1019415.36E-394150IPR003441NAC domain
PfamPF023656.1E-185130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MNSLVGFRFY PTDEEIICLL KMKRLDPGFS VRTIKEIDFY GFEPWELPCH SEIQSEEEVW  60
YFFCEPDYKY AKSKRVNRGT KEGTWKKTGN GSKIKRKYST EVIGTKRILS FSRHDSASKK  120
AKTEWVMHEI AVEDDPVYKK DFVVCRLERK RDQMKFGVVS AKRKQAKKLG VSTSDKDQPS  180
QNLTSKRKRD QKLGVSISDQ DQSSQNLTSK RNHLAEDTNR NHFTRKEDLV SNNNHVTENG  240
VLVSEVQARD HSISHSRNRV SENIVENSVE AEARQLLEFN PQGGGYTGLN DASFSALQSP  300
VYPEQESSCS NGSSYGSGLL NSQFDSEQVD GQFNSWRDFQ NKYSPDETGQ TTPDFFSSKS  360
DNGVYVEDGV VESGYLGHLD AQVALYHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-21615120166NO APICAL MERISTEM PROTEIN
1ut4_B5e-21615120166NO APICAL MERISTEM PROTEIN
1ut7_A5e-21615120166NO APICAL MERISTEM PROTEIN
1ut7_B5e-21615120166NO APICAL MERISTEM PROTEIN
3swm_A7e-21615123169NAC domain-containing protein 19
3swm_B7e-21615123169NAC domain-containing protein 19
3swm_C7e-21615123169NAC domain-containing protein 19
3swm_D7e-21615123169NAC domain-containing protein 19
3swp_A7e-21615123169NAC domain-containing protein 19
3swp_B7e-21615123169NAC domain-containing protein 19
3swp_C7e-21615123169NAC domain-containing protein 19
3swp_D7e-21615123169NAC domain-containing protein 19
4dul_A5e-21615120166NAC domain-containing protein 19
4dul_B5e-21615120166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387910.10.0NAC domain-containing protein 89-like
RefseqXP_015387911.10.0NAC domain-containing protein 89-like
RefseqXP_015387913.10.0NAC domain-containing protein 89-like
RefseqXP_024042301.10.0NAC domain-containing protein 89-like
RefseqXP_024956939.10.0NAC domain-containing protein 89-like
RefseqXP_024956940.10.0NAC domain-containing protein 89-like
TrEMBLA0A067DNM90.0A0A067DNM9_CITSI; Uncharacterized protein
STRINGXP_006485395.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.23e-30NAC domain containing protein 80