PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047854m
Common NameCISIN_1g047854mg, LOC102628257
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 260aa    MW: 29631.1 Da    PI: 8.8013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047854mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73e-191360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ll + v++lG g+W+++ar  g++R++k+c++rw +yl
  orange1.1g047854m 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
                       79********************************************97 PP
2Myb_DNA-binding51.72.1e-1666110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  orange1.1g047854m  66 RGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                        7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.166860IPR017930Myb domain
SuperFamilySSF466893.48E-3110107IPR009057Homeodomain-like
SMARTSM007171.6E-161262IPR001005SANT/Myb domain
PfamPF002496.5E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-231467IPR009057Homeodomain-like
CDDcd001671.41E-111560No hitNo description
PROSITE profilePS5129424.75461115IPR017930Myb domain
SMARTSM007171.8E-1365113IPR001005SANT/Myb domain
PfamPF002492.5E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2468114IPR009057Homeodomain-like
CDDcd001671.33E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGWGATTEQG WRKGPWTPEE DKLLTEHVNL LGEGRWSSVA RSAGLNRSGK SCRLRWVNYL  60
RPGLKRGQLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKEKSSQKQ  120
EKRKALLLKQ KQQQQKQQQQ HEDNMNRVSS NDEKTMSTAE HEKQMAFMQP AMAMENQSWP  180
TMYQDIASWP SDHHQPAVID ELGLWGGLWT FDDTNGRVDA STNCNKMAAA VQQNQAATFA  240
LGGDSSNFCN GGYIFQEGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5846881e-35JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482652.20.0transcription factor MYB57
TrEMBLA0A2H5P1P80.0A0A2H5P1P8_CITUN; Uncharacterized protein
STRINGXP_006482652.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-68myb domain protein 121