PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047852m
Common NameCISIN_1g047852mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 423aa    MW: 47886.1 Da    PI: 7.1094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047852mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.9e-51141361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLp     +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  orange1.1g047852m  14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLP-----REKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 99 
                        579***************************.89***************.....789************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++ +glkk+Lvfykg+a kg ktdW+mhe+rl
  orange1.1g047852m 100 YSSeGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 136
                        **956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-5414167IPR003441NAC domain
PROSITE profilePS5100556.50614167IPR003441NAC domain
PfamPF023651.3E-2516136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDERNENDKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
REKEWYFYCP RDRKYRNSAR PNRVTGAGFW KATGTDRPIY SSEGNKCIGL KKSLVFYKGK  120
AAKGIKTDWM MHEFRLPSLI DSVPPKRFMD KTIPANDSWA ICRIFKKTNS TAQRALSQSW  180
VSPLPETASS TDAHVKSSYN TQFSLTSSMA QYFNCNNDIQ QQPSSSSSCL TNTSTNSTFS  240
PFDFVPYKPI NPVIISKPHH QLPNISSGDL TSSFMFSPFE PTIPAAKCNI NDVSSVLLSM  300
SSDSMLGDFG KASDQCIDFV GSQDQYSGFS TTALPHYEMQ AAVTDISNGD HHLHHEDVLM  360
KNQHMMNHVD DQWESTVRPI GFPFSLPMMS LAAETWKPSS LWDCSSCPRE ISTSVSTSKF  420
ML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5251747171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5251747171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5251747171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5251747171NO APICAL MERISTEM PROTEIN
3swm_A3e-52517410174NAC domain-containing protein 19
3swm_B3e-52517410174NAC domain-containing protein 19
3swm_C3e-52517410174NAC domain-containing protein 19
3swm_D3e-52517410174NAC domain-containing protein 19
3swp_A3e-52517410174NAC domain-containing protein 19
3swp_B3e-52517410174NAC domain-containing protein 19
3swp_C3e-52517410174NAC domain-containing protein 19
3swp_D3e-52517410174NAC domain-containing protein 19
4dul_A2e-5251747171NAC domain-containing protein 19
4dul_B2e-5251747171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438680.10.0protein FEZ
RefseqXP_006483697.10.0protein FEZ
SwissprotQ9ZVH01e-109FEZ_ARATH; Protein FEZ
TrEMBLA0A067GW490.0A0A067GW49_CITSI; Uncharacterized protein
STRINGXP_006483697.10.0(Citrus sinensis)
STRINGXP_006438680.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-104NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]