PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047780m | ||||||||
Common Name | CISIN_1g047780mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 127aa MW: 14659.2 Da PI: 10.271 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.3 | 2.5e-18 | 32 | 117 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y+k +GF++ k++s+k ++g + f Cs++gk++ ++++ + + r++t+ +Ckak+ v +dgk +v++++ eHnHel+ orange1.1g047780m 32 QFYKLYGKLMGFEIIKRTSRKY-EEGVLKFVSFSCSQNGKSRCKSRH---AFKLRPTTKKNCKAKVSVIVIRDGKCKVSSIVYEHNHELN 117 6****************99998.8889****************9888...9999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-15 | 32 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGDELEEHLL ENLILRNSQI IMIFDTTVEL SQFYKLYGKL MGFEIIKRTS RKYEEGVLKF 60 VSFSCSQNGK SRCKSRHAFK LRPTTKKNCK AKVSVIVIRD GKCKVSSIVY EHNHELNTPN 120 KARFLK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.9261 | 1e-95 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024161868.1 | 4e-36 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A067FAM3 | 2e-87 | A0A067FAM3_CITSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 1e-10 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047780m |