PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047748m | ||||||||
Common Name | CISIN_1g047748mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 36812.9 Da PI: 10.2278 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 176 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H orange1.1g047748m 176 ACSQCGEVFPKIESLELHQAVrH 198 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.808 | 175 | 203 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.74E-11 | 200 | 327 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.0E-5 | 201 | 318 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MALVTFLPEP TESKKQPAAA LPPSKRNRKQ QKVQKQKEKQ PSSWDQIKNL LTCKQIEVSK 60 VHDPAAKNVN GYSRLGSSCS SICSFKDVVH GNTKVVHRAD NSPESSTLGQ ETGLLSRKAV 120 NGSSTRSASV SARSNGCRTY SSSSRGMQFR KLSGCYECHT IIDPSRFPSP RTTICACSQC 180 GEVFPKIESL ELHQAVRHAV SELGPEDSSR NIVEIIFKSS WLKQNSPMCK IERILKVHNT 240 QRTIQRFEDC RDAVKTRALN STRKNPRCAA DGNELLRFHC TTLSCNLGSR GSSTLCGSVP 300 GCSVCTIIRH GFRGKECKGV RTTASSGRAH DSLKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5468 | 0.0 | flower| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435171.1 | 0.0 | uncharacterized protein LOC18041417 | ||||
TrEMBL | A0A067HB04 | 0.0 | A0A067HB04_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4TFF4 | 0.0 | V4TFF4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435171.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-134 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047748m |