PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047722m | ||||||||
Common Name | CISIN_1g047722mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 139aa MW: 14897.5 Da PI: 9.8939 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 81 | 117 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC+t +Tp+WRrgp g+ktLCnaCG++yrk+++ orange1.1g047722m 81 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 55559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-11 | 77 | 129 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-13 | 79 | 124 | No hit | No description |
Pfam | PF00320 | 6.2E-17 | 81 | 117 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 85 | 120 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.33E-9 | 85 | 112 | No hit | No description |
PROSITE profile | PS50114 | 11.952 | 85 | 119 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGSQLPNSPL NYNNVSINPD NNLQHAAAAS ALASMKGYTL INVPASRNQQ LGTTASSSAA 60 ASAPRGAAGI PRPHGYPYKR CTNYNCNTND TPMWRRGPLG PKTLCNACGI KYRKEEEKRK 120 AKETETSNID QNSNNQTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006492723.1 | 4e-71 | GATA zinc finger domain-containing protein 12-like | ||||
Swissprot | Q9LT45 | 4e-20 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | A0A067ERC1 | 1e-96 | A0A067ERC1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PC59 | 5e-96 | A0A2H5PC59_CITUN; Uncharacterized protein | ||||
STRING | XP_006492723.1 | 1e-70 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 2e-14 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047722m |
Publications ? help Back to Top | |||
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