PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047657m | ||||||||
Common Name | CISIN_1g047657mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 126aa MW: 14795.9 Da PI: 11.145 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.6 | 1.3e-10 | 11 | 69 | 2 | 60 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrt 60 +++eYA++ GF +rk++++++ +g+it+ +vCs+eg+r +++ + +++ r+ r+ trt orange1.1g047657m 11 CFREYARTKGFGIRKHNKRRN-VQGKITHIAWVCSREGFRYRKHLEnKRRIREARPMTRT 69 589************998888.8888**************99887724455567777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-8 | 11 | 69 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
EFGSEEEVEI CFREYARTKG FGIRKHNKRR NVQGKITHIA WVCSREGFRY RKHLENKRRI 60 REARPMTRTS HRRVTEPDLV AASSLQQVGV KPPQIHKFMV HRSGGYDKVG YSMKDVQNRL 120 DSKRQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042873.1 | 2e-47 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067D641 | 4e-88 | A0A067D641_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006441659.1 | 8e-45 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18284 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-08 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047657m |