PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047654m
Common NameCISIN_1g047654mg, LOC102626338
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 380aa    MW: 41479.4 Da    PI: 4.6664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047654mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-103013411055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  orange1.1g047654m 301 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 341
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14291356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12296350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-11300345No hitNo description
PfamPF000101.2E-7301341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEGAIAEGEW SSLSGMYTTD QEADFMAQLL RNCPVSAELE GSSSFGNSSS PTFWPNHGAN  60
DYGSYYSLDI GAYSGGGGSS IFSPYSSSQE SFYLSDSHQI LGTNNINHNN INSSISMDFC  120
MGDANCNTSS YLIDNQGQDE CLNNQENNNI SDGNKPELGF PVKALDMKNE SEMQATEPAV  180
EEKLNNPSES SKKRSRNATD VQKNNKRNVK SKKNQKRAVT AISNTEEDND TNNNENENIK  240
SIVGANRLQL SSSCCSEDES NASQDQIGGE DSSKGKVALN LSGKTRASRG SATDPQSLYA  300
RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL QLQIKLLSSD DLWMYAPIAY  360
NGMNIGLDHL KLAAASKLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034827.10.0transcription factor bHLH84
TrEMBLA0A067F3170.0A0A067F317_CITSI; Uncharacterized protein
TrEMBLA0A2H5P8R30.0A0A2H5P8R3_CITUN; Uncharacterized protein
STRINGXP_006487068.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-51bHLH family protein