PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g047580m | ||||||||
Common Name | CISIN_1g047580mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 135aa MW: 15239.5 Da PI: 9.2121 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.4 | 3.2e-25 | 42 | 126 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk vGF + + + ++s+r+g+i++r+f C+keg+r ++kk+ +r + + r gCka+++v+ke +gkw vtkle+ H+H+l orange1.1g047580m 42 YYDAYAKCVGFIIWVGNCHHSSRDGSIVSRRFLCNKEGFRVNNKKT---KRLEVRKPREGCKAMIMVRKEASGKWIVTKLETSHSHPL 126 8*****************************************9999...88899999*****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-23 | 42 | 126 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 135 aa Download sequence Send to blast |
MTEGGELIDF YDGRELIVNE ADRHAVRYIG MEFESEEAAM AYYDAYAKCV GFIIWVGNCH 60 HSSRDGSIVS RRFLCNKEGF RVNNKKTKRL EVRKPREGCK AMIMVRKEAS GKWIVTKLET 120 SHSHPLGIPA GKGR* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119173.1 | 7e-71 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_028119174.1 | 6e-71 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
Refseq | XP_028119175.1 | 6e-71 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
Swissprot | Q9SZL8 | 7e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067F5P5 | 3e-95 | A0A067F5P5_CITSI; Uncharacterized protein | ||||
STRING | VIT_00s0174g00090.t01 | 6e-64 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25913 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-28 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g047580m |
Publications ? help Back to Top | |||
---|---|---|---|
|