PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047562m | ||||||||
Common Name | CISIN_1g047562mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28263.8 Da PI: 6.7881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 73 | 120 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + + Lr+llP ++K s ++ +Av+YIk+Lq orange1.1g047562m 73 RDIERHRRQEMSTLYRSLRSLLPLeY---LKGKRSMSDHMNEAVNYIKNLQ 120 679*********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.55E-14 | 66 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.83 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.55E-9 | 69 | 124 | No hit | No description |
SMART | SM00353 | 4.9E-4 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-10 | 73 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-8 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDYIPSLVFP FDRTDPHDDQ LPCQQQYHTA GQQNDNQLIF NPLEYGSDLK RPETTNIFAV 60 NDDNSKKMKI MRRDIERHRR QEMSTLYRSL RSLLPLEYLK GKRSMSDHMN EAVNYIKNLQ 120 NRIQKLSEKR DELRRLSNSS SSPYYSTTSE SECSQTHINL EDSVTVRPCL AGVEVAINTS 180 FRKGIPLSQV VALLAEEGLT VVNCISTKIN ERLLHNIESE VNDGGRNIDP FELQQKIMKL 240 TSPSSN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440484.2 | 0.0 | transcription factor bHLH36 | ||||
TrEMBL | A0A067F8F6 | 0.0 | A0A067F8F6_CITSI; Uncharacterized protein | ||||
STRING | XP_006477344.1 | 1e-180 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 6e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047562m |