PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g047542m

Common Name

CISIN_1g047542mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 271aa MW: 29852.3 Da PI: 9.6878

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g047542m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	100	120	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs++ L H++ H orange1.1g047542m 100 CNFCNKIFSTSQALGGHQNAH 120 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.29E-7	95	125	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-5	96	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGTQSSPKPC LSESSSISAT SQQQEAPNKQ VAEVTEPIQT KSKFNILFNQ NIAIDNVSVT 60 ESEVELRLFS MGGTSNPQAN ESSSHESIRK KQPKQKGFLC NFCNKIFSTS QALGGHQNAH 120 KQERALAKRR KEMDMGALGH HHYPYYPYSS SVAHQNPNFY GSLFNRSSPL GVSMQPMIRK 180 PSYPWVPLWD RFGGHGKTVM NAQLAYDKMR LESVMEAQNG GVRAEFRNLN GSGMAAKRPN 240 NDGGDRLKGN SSSQSNQHDD DSGLDLSLKL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389423.1	0.0	zinc finger protein 3-like
TrEMBL	A0A067ETN7	0.0	A0A067ETN7_CITSI; Uncharacterized protein
STRING	XP_006421473.1	1e-148	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	2e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g047542m