PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047455m
Common NameCISIN_1g047455mg, LOC102614115
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 368aa    MW: 40290.1 Da    PI: 4.5685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20124174155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa+ +++a+ kl+g
  orange1.1g047455m 124 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAARVYDNAAIKLRG 174
                        59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-33124181No hitNo description
SMARTSM003802.6E-39125188IPR001471AP2/ERF domain
PROSITE profilePS5103224.408125182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-30125182IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22125182IPR016177DNA-binding domain
PfamPF008473.5E-13125174IPR001471AP2/ERF domain
PRINTSPR003672.0E-10126137IPR001471AP2/ERF domain
PRINTSPR003672.0E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEQSSSLCPI KYTVHRNVTK KFTKPSLKSN KRIADERRVV RILTTDHDAT DSSSDEEGEF  60
FSRQRVKRYV SEINIETSCS SSSKNSSSNA AGAVGSNRKR VAADNMNNDA ARPLRQASQT  120
TNGKKFRGVR QRPWGKWAAE IRDPARRVRL WLGTYDTAEE AARVYDNAAI KLRGPDALTN  180
FSTPPPAVEV EVEVEKPETT INVSATATVS GYESGEESHC HNLSSPTSVL NFRTHSSEES  240
EQEKPPKDEE IQGETTTTAV LCDDSSGGGD YLPLDLPFLD EFFSNVPTPG LSFFHDDGGN  300
PAAPMFQDSI FFSTDEFLDT VPQDFGGDFT FSTTSSYPSS SALCQVDDYF QDIGDLFSAD  360
PPLVGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20123181362ATERF1
3gcc_A1e-20123181362ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.111250.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422111.10.0ethylene-responsive transcription factor CRF4
RefseqXP_006490583.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A067EYX30.0A0A067EYX3_CITSI; Uncharacterized protein
TrEMBLV4SED30.0V4SED3_9ROSI; Uncharacterized protein
STRINGXP_006490583.10.0(Citrus sinensis)
STRINGXP_006422111.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-46cytokinin response factor 4