PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047353m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 922aa    MW: 99610.3 Da    PI: 4.5802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047353mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131348743
                       HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                       +Ede+++++v+++G++ W+tIa++++ gR +kqc++r
  orange1.1g047353m 13 QEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRER 48
                       7*************************.6666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.122165IPR017930Myb domain
SMARTSM007171.4E-8663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-151365IPR009057Homeodomain-like
PfamPF002491.5E-111348IPR001005SANT/Myb domain
CDDcd001677.54E-111348No hitNo description
SuperFamilySSF466892.02E-121361IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MLTLSANCHI CNQEDEIIIE LVNKYGPKKW STIAQHLPGR IGKQCRERTD NAIKNHWNSS  60
VKKKLDSYLA SGLLEQFQGL PLVGHQNQPL PSSSQRMQSS GDESCPKGGT EGEEVSECSQ  120
ESAGVAHTHS AGNVVLQTRD QFIFSEESCP GKDRSSSPAS CTEQYYTSLE DVTFSIPEIP  180
CEAGCSSKFP EQSFVNNAGS FASTPYQFNL QDVSNFSALE LGHQSAGLPA HCISSHEGHE  240
VANVPFQSSM GLSVPSSAGN LAAGSAKPEN MLISDDECCR VLFAEAMKDG CFSLENLPQG  300
LNIVDSLLCR SLDVPISESD RTSSSQAFCP LRPELLGTSC SQSFLSGPML LLPDDSGFLY  360
GREPSQLNCH SYGTQEQELN TNGQAGFICT NESTNSPCDD GTDNSGLQES SYLPKDSLKL  420
VPINTFGSGA DAMISCPSVE VKQEAQTEQQ DSGALCYEPP RFPSLDIPFF SCDLIQSGND  480
MLQEYSPLGI RQLMSSMNCI TPFRLWDSPS RDGSPEAVLK SAAKTFTGTP SILKKRNRDL  540
LSPLSDRRND KKLETDLTSC LARDFSRLDV MFDDGGANKA SLLSPSSNQK RNSGSFIEDK  600
ENLSGGQEKD KDIIVKDKTS EKDFDGSNSQ ENMKPKTVDT DSKTKIDADA ASETVKKPAS  660
ILVEHNMNDL LFSPDQVGSK ANRALGSLAR TPRTQYCKGF GVTANQGFSS EQSPRNTSSP  720
AVCKRSNESS AGAVASVQAI PSLALTGETT TTAGNDAGTE NYNIFGETPF KRSIESPSAW  780
KSPWFINSFV PGPRVDTEIS IEDIGYFMSP GDRSYDALGL MKQLSEHTAA AYADALEVLG  840
GESSETLVNE RNSKSPSMDQ GIEHLPENEN ESSHLDSNVM MERRTLDFSE CGTPAKGTET  900
RKSLTGVNFS SPSSYLLKGC R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116899e-52callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450634.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_024034229.10.0transcription factor MYB3R-1 isoform X1
TrEMBLV4WBV50.0V4WBV5_9ROSI; Uncharacterized protein
STRINGXP_006450634.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-167Homeodomain-like protein