PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047334m | ||||||||
Common Name | CISIN_1g047334mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40382.4 Da PI: 7.3399 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 8.9e-20 | 209 | 259 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAa+a+++a+ +l+g orange1.1g047334m 209 HYRGVRRRP-WGKYAAEIRDPTRRG--VRVWLGTFDTAIEAARAYDRAAFQLRG 259 8********.**********97665..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-32 | 208 | 268 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.32E-31 | 208 | 267 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 209 | 259 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 209 | 268 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.526 | 209 | 267 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-36 | 209 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 210 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 233 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
NLPSCIIEGP LKSQLLRIAE AYISVVRVNL IQHTQNSSIF LRFKNSIRDT ACLVAMATPI 60 EKSALEFIEQ HLFGENSPIA GFSSSLSSDT CSQSQTSSSA SSDRSFFNDA VFFDYESKPQ 120 IIDLVTPQPT NTCSELTNDF FEFDIRPQIQ SQPSNCSSEF EPKPKISPNS SSQSSRKPSL 180 KISVPKKAEG HHFTNRKSKA KPESSEEKHY RGVRRRPWGK YAAEIRDPTR RGVRVWLGTF 240 DTAIEAARAY DRAAFQLRGS KAILNFPLEA GKCDSNAAVA RECDSSAEAG ACETKRKRDC 300 ESEEEERKAK VVKTESADTV NEFPLTPASC AAFWDLHLDW DCGVKGIFNA PLLSPLSPQP 360 LMVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-29 | 208 | 268 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7281 | 0.0 | callus| fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00437 | DAP | Transfer from AT4G17490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ698835 | 0.0 | HQ698835.1 Citrus medica var. sarcodactylis ethylene-responsive element binding factor 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440235.1 | 0.0 | ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A067FCZ1 | 0.0 | A0A067FCZ1_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006477126.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 9e-36 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047334m |