PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047334m
Common NameCISIN_1g047334mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 365aa    MW: 40382.4 Da    PI: 7.3399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047334mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-20209259255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAa+a+++a+ +l+g
  orange1.1g047334m 209 HYRGVRRRP-WGKYAAEIRDPTRRG--VRVWLGTFDTAIEAARAYDRAAFQLRG 259
                        8********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-32208268IPR001471AP2/ERF domain
CDDcd000184.32E-31208267No hitNo description
PfamPF008471.2E-13209259IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23209268IPR016177DNA-binding domain
PROSITE profilePS5103224.526209267IPR001471AP2/ERF domain
SMARTSM003807.0E-36209273IPR001471AP2/ERF domain
PRINTSPR003672.4E-10210221IPR001471AP2/ERF domain
PRINTSPR003672.4E-10233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
NLPSCIIEGP LKSQLLRIAE AYISVVRVNL IQHTQNSSIF LRFKNSIRDT ACLVAMATPI  60
EKSALEFIEQ HLFGENSPIA GFSSSLSSDT CSQSQTSSSA SSDRSFFNDA VFFDYESKPQ  120
IIDLVTPQPT NTCSELTNDF FEFDIRPQIQ SQPSNCSSEF EPKPKISPNS SSQSSRKPSL  180
KISVPKKAEG HHFTNRKSKA KPESSEEKHY RGVRRRPWGK YAAEIRDPTR RGVRVWLGTF  240
DTAIEAARAY DRAAFQLRGS KAILNFPLEA GKCDSNAAVA RECDSSAEAG ACETKRKRDC  300
ESEEEERKAK VVKTESADTV NEFPLTPASC AAFWDLHLDW DCGVKGIFNA PLLSPLSPQP  360
LMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-29208268161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.72810.0callus| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6988350.0HQ698835.1 Citrus medica var. sarcodactylis ethylene-responsive element binding factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440235.10.0ethylene-responsive transcription factor 6
TrEMBLA0A067FCZ10.0A0A067FCZ1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006477126.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.19e-36ethylene responsive element binding factor 6