PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047100m | ||||||||
Common Name | CISIN_1g047100mg, LOC107175663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25618.4 Da PI: 7.094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 134 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg+++t+e+Aa a+++a+ k++g orange1.1g047100m 134 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTPEGAAFAYDRAAFKMRG 184 59*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.105 | 134 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-23 | 134 | 193 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 134 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-38 | 134 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-31 | 134 | 194 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 135 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 174 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MNRENMSESD LALLESIRQQ LLEDDFEIFT TFPSETLPIN NNETLNSPVS SFNSFSFTEN 60 INEYLSQGVS SSSHSSLHDG VNGGWISFDD QLGRNNDIGS AIANIDTSMT SPPHPPPLPT 120 PQMDVARGTH VRMQYRGVRR RPWGKFAAEI RDPKKNGARV WLGTYDTPEG AAFAYDRAAF 180 KMRGSKAKLN FPHLIGSNVE PPVRVTKKRG SPEPPSSSSS LSSSSSVVSF RPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-30 | 126 | 197 | 1 | 68 | ATERF1 |
3gcc_A | 7e-30 | 126 | 197 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.627 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445414.1 | 1e-171 | ethylene-responsive transcription factor 13 | ||||
Refseq | XP_015382808.1 | 1e-171 | ethylene-responsive transcription factor 13 | ||||
TrEMBL | A0A067HCL9 | 1e-170 | A0A067HCL9_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VYV3 | 1e-170 | V4VYV3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006445414.1 | 1e-170 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 8e-43 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047100m |
Entrez Gene | 107175663 |