PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047100m
Common NameCISIN_1g047100mg, LOC107175663
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 234aa    MW: 25618.4 Da    PI: 7.094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20134184255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp++ng  +r++lg+++t+e+Aa a+++a+ k++g
  orange1.1g047100m 134 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTPEGAAFAYDRAAFKMRG 184
                        59*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.105134192IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23134193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-32134193IPR001471AP2/ERF domain
SMARTSM003802.1E-38134198IPR001471AP2/ERF domain
CDDcd000181.42E-31134194No hitNo description
PfamPF008471.2E-13135184IPR001471AP2/ERF domain
PRINTSPR003671.4E-13135146IPR001471AP2/ERF domain
PRINTSPR003671.4E-13174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNRENMSESD LALLESIRQQ LLEDDFEIFT TFPSETLPIN NNETLNSPVS SFNSFSFTEN  60
INEYLSQGVS SSSHSSLHDG VNGGWISFDD QLGRNNDIGS AIANIDTSMT SPPHPPPLPT  120
PQMDVARGTH VRMQYRGVRR RPWGKFAAEI RDPKKNGARV WLGTYDTPEG AAFAYDRAAF  180
KMRGSKAKLN FPHLIGSNVE PPVRVTKKRG SPEPPSSSSS LSSSSSVVSF RPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30126197168ATERF1
3gcc_A7e-30126197168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.6270.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445414.11e-171ethylene-responsive transcription factor 13
RefseqXP_015382808.11e-171ethylene-responsive transcription factor 13
TrEMBLA0A067HCL91e-170A0A067HCL9_CITSI; Uncharacterized protein
TrEMBLV4VYV31e-170V4VYV3_9ROSI; Uncharacterized protein
STRINGXP_006445414.11e-170(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-43ethylene-responsive element binding factor 13