PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046965m

Common Name

CISIN_1g046965mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 287aa MW: 32127.9 Da PI: 8.2249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046965m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H orange1.1g046965m 109 FSCNYCKREFSTSQALGGHQNAH 131 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.68E-6	106	136	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-4	107	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.1E-6	108	133	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.718	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MKALFLEASS AEASSIILAS SSEETSCMGK SDENKRMKMK HVVDAIDESR RPESSSSLLL 60 DLRLYNDDYL VCGSGLFNRM SMMNNNHCHE ENNGHPTSSE KKSSEARVFS CNYCKREFST 120 SQALGGHQNA HKQERAVAKR RQGVDQDVGA AAFGNQHFSF YSPYYSRFSP YYGSFNRSLG 180 VKMNSMIHKP VAYGSHPWPS ANYRFGLGSW LVRQGMNMKD PQQTRMRMNG LGISGPSSRF 240 EERDALAATN IIHKDNPIGV DFLQRGDPFK SDHQEDPTEL DLSLKL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432359.1	0.0	zinc finger protein 3
TrEMBL	A0A067DJM2	0.0	A0A067DJM2_CITSI; Uncharacterized protein
STRING	XP_006432359.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-20	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g046965m