PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046939m | ||||||||
Common Name | CISIN_1g046939mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18739.8 Da PI: 6.1341 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 28 | 48 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C ++F +++ L +H +tH orange1.1g046939m 28 CAVCQQVFFSPEALINHYQTH 48 *******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSGNGHPDGF SLAPPPHRSN SNPVQEHCAV CQQVFFSPEA LINHYQTHIR GEELMNFQNN 60 FIRVRNQAAL EAQRLFGFDI PRQNQHLHPP SFSLPPIAMR RIQSFPPPTN DGTVISAARA 120 RAAVANQLNQ PAAAAIPNQI DLNSDYNEEN NNPSDGIDDG SINLDLTLGR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067EJK2 | 1e-120 | A0A067EJK2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q7I9 | 1e-120 | A0A2H5Q7I9_CITUN; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046939m |