PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046885m
Common NameCISIN_1g046885mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 211aa    MW: 23622.6 Da    PI: 9.554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046885mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-055577123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  orange1.1g046885m 55 YSCSFCRREFKSAQALGGHMNVH 77
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-65281No hitNo description
PROSITE profilePS5015711.1575582IPR007087Zinc finger, C2H2
SMARTSM003550.00845577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEAQAQYWMW MKRQRDQILK YSFSDSSSSS WEEKAFAEDA AARSLGGCIW PPRSYSCSFC  60
RREFKSAQAL GGHMNVHRRD RARLKNSLNK STHHKCPSDH SSPSNNVVVV ASSPTLLNTR  120
VTAALLTTAK ENSSSSFVTI NHEDDFVETN LSVGLKPDIW CDKTISCKRT KTSAAVSKST  180
QPFFMSSDKF SLQKENLDLE LRLGDPSKMK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135077229superman protein
2l1o_A5e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435625.11e-146probable transcriptional regulator RABBIT EARS
TrEMBLA0A067G0F11e-155A0A067G0F1_CITSI; Uncharacterized protein
STRINGXP_006435625.11e-146(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-32C2H2 family protein