PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046859m | ||||||||
Common Name | CISIN_1g046859mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 459aa MW: 52573.6 Da PI: 6.6911 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 213 | 259 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll+++v q+G + W+ Ia++++ gR +kqc++rw+++l orange1.1g046859m 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 259 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1e-17 | 267 | 307 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ orange1.1g046859m 267 IWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 307 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.292 | 208 | 263 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.59E-31 | 210 | 306 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 212 | 261 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 214 | 263 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-15 | 216 | 259 | No hit | No description |
Pfam | PF13921 | 1.5E-17 | 216 | 274 | No hit | No description |
SMART | SM00717 | 7.6E-17 | 264 | 312 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.191 | 264 | 314 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 264 | 312 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-13 | 268 | 310 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MELDTKLRDQ AHHHASQQQP IFLSENYMKP ELPFEVPSSK GTTITNNLQD FDRHHHDLDD 60 DDGHHHLFVN LNGSSSTNPF SVHTSCFESL DAFPYNYSSS SNFDFYECKP FADHNYSSGN 120 GQVMDNFQSG GYLNYHQQQQ VNPVDILGSD HRSHMQLDFQ EMKPVNFLVS DEVSCVSAGN 180 GYYKKAGMDK NNNRAYHSVR KTMKIGKKSN VVKGQWTTEE DRLLIRLVDQ FGIRKWSHIA 240 QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDKALIEAH AEIGNKWAEI AKRLPGRTEN 300 SIKNHWNATK RRQFSKRKCR SKYPRASLLQ DYIKSLNLDA AGSSKHQRKN SSNINANNKS 360 KAATKSSPPA AAEQDFCRSD HLVPDFDFNE VPDFDFDDKL FDENCSIDSL IEEMTCAPVV 420 DHQKSLDMKV PPLDVPPVME FEVKKELDLV EMISQANL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-43 | 211 | 313 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-43 | 211 | 313 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477545.1 | 0.0 | transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 1e-99 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A067FTX0 | 0.0 | A0A067FTX0_CITSI; Uncharacterized protein | ||||
STRING | XP_006477545.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5869 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-98 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046859m |
Publications ? help Back to Top | |||
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