PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046720m
Common NameCISIN_1g046720mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 456aa    MW: 52490.6 Da    PI: 8.7061
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046720mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.33.4e-2529114190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYneYAk+vGFsvr+++s+ks + gei+++++vCskeg +++e  +   ++r+ ++ r gCkakl v k+k+g+++v+ +e++HnH+l+
  orange1.1g046720m  29 EFYNEYAKKVGFSVRINSSRKS-HRGEIVRKEYVCSKEGATTKEVVE---KKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLT 114
                        6********************9.6777**************999766...88888999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2229114IPR004330FAR1 DNA binding domain
PfamPF105514.8E-34235328IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNDIGIDTGE SYEEARLGQE FVLLDDVHEF YNEYAKKVGF SVRINSSRKS HRGEIVRKEY  60
VCSKEGATTK EVVEKKRRCS KVREGCKAKL AVVKSKSGTY VVSVFEEDHN HPLTTPRRVH  120
LLRSHRNVSE VKRSLTHQLA AANIPIHQQI SVLELQGGGI QNIGCLGKDL YNDETKSKNK  180
VKGHDADMLL EHFQLEKEKN SAFTFTIESD NENRITHCFW ADATSRRGYN SFGDVVVFDT  240
TYNTNKYGMI FAPFIGVNNH GQTTVFACSF LSDETTESFV WLFEQFKKAM PGDLPKMIIT  300
DQDPAITKAI SETLPNTFHR YCIWHILNKF SDKIHAIKHK DCYPDFQKCI WKSLSRDDFD  360
RNWLEIIEKG KLRDNAWLKS VFEIRSKWVP ACVNHVFSAG MSSSQRAESC HSFFKRYVSK  420
KNSLLDFMIR FNRALNHQRH EELNANHADI MKNLL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389930.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024038310.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067D5X90.0A0A067D5X9_CITSI; Uncharacterized protein
STRINGXP_006428864.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-93FAR1-related sequence 5