PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046581m
Common NameCISIN_1g046581mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 471aa    MW: 52966.1 Da    PI: 7.361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046581mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-18173219148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT eEd +l+++vkq+G + W+ I+++m  gR +kqc++rw+++l
  orange1.1g046581m 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL 219
                        799*****************************.*************97 PP
2Myb_DNA-binding58.31.8e-18225267145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +++W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++++k++w+
  orange1.1g046581m 225 KDSWSEEEERILVEAHARIGNR-WAEIAKHIP-GRTENSIKNHWN 267
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.093168223IPR017930Myb domain
SuperFamilySSF466891.73E-30171266IPR009057Homeodomain-like
SMARTSM007171.5E-17172221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-27174227IPR009057Homeodomain-like
PfamPF139212.3E-20176233No hitNo description
CDDcd001677.12E-16176219No hitNo description
SMARTSM007171.6E-17224272IPR001005SANT/Myb domain
PROSITE profilePS5129421.147224274IPR017930Myb domain
CDDcd001672.52E-13227270No hitNo description
Gene3DG3DSA:1.10.10.602.0E-21228272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEAAAARGGG GGGGGGGGGS GNTSFRYQNL QQNNKPHHQV YRPSPPLTAI DRFLWGQNNC  60
SQQQQQQTQN IARNNKERVI SLCAFSSTSG ASTAAAYGGQ HEALRTSTTT TTLEPTSFVD  120
GFFADGTAND QSLINWSYDI IYKEGSKSAC NNNKGMIGHK RSNKKGASVA LIKGQWTDEE  180
DRKLIKLVKQ YGVRKWAQIS ERMAGRAGKQ CRERWHNHLR PDIKKDSWSE EEERILVEAH  240
ARIGNRWAEI AKHIPGRTEN SIKNHWNATK RRQNSRRKNK QNEKQKGNKN KPQSSVLQDY  300
IRSKNSSNNS PTCSTFSEDP SIHDHHDHDH FNYLLPELSE STTDDSPPLI AETYDEELSF  360
MQNYFPSSNF NQPPIEQHYN DHHQHQQLTD VTNQAVQAVE PPAAATNMYS DLYLSCLLNG  420
TTISSSTECG HGYNINDMNM YLQQQQQHGV DHEMQEMDLM EMVSSSQFFN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-451712732104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-4417127356158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4417127356158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-451712732104C-Myb DNA-Binding Domain
1msf_C3e-451712732104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024958172.10.0transcription factor MYB119-like
TrEMBLA0A067FTR50.0A0A067FTR5_CITSI; Uncharacterized protein
STRINGXP_006488685.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-67myb domain protein 119