PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046570m | ||||||||
Common Name | CISIN_1g046570mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28454.6 Da PI: 6.7811 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + orange1.1g046570m 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 57 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ orange1.1g046570m 66 PFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.884 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-16 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-25 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-14 | 14 | 56 | No hit | No description |
SMART | SM00717 | 1.5E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.598 | 63 | 113 | IPR017930 | Myb domain |
CDD | cd00167 | 1.30E-11 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-14 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
TNSNSNNNDR IKGSWSPQED ATLIKLVEQH GPRNWSMISS GIPGRSGKSC RLRWCNQLSP 60 TVQHRPFTPA EDSIIIQAHA VHGNKWATIA RSLPGRTDNA IKNHWNSTLR RKRMAELSSA 120 SSESNSVMMK RPGFENNISS AESDSDSGGI KRQCLRVSQE HDSYNVEAGI VGPETFGGEK 180 VEDEEKLKIN KECDGDGDGG KIEKEKGEDR CTVDMEMEES CLFTIMRRMI AEEVRNQFDG 240 LRAQAGLRFS VQKDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-38 | 11 | 112 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435772.1 | 1e-170 | transcription factor MYB73 | ||||
Refseq | XP_006486296.1 | 1e-170 | transcription factor MYB73-like | ||||
TrEMBL | A0A067FND1 | 0.0 | A0A067FND1_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006486296.1 | 1e-170 | (Citrus sinensis) | ||||
STRING | XP_006435772.1 | 1e-170 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-53 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046570m |