PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046523m
Common NameCISIN_1g046523mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 372aa    MW: 42313.2 Da    PI: 7.3085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046523mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52101441128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  orange1.1g046523m  10 VPPGFRFHPTDEELLYYYLRKKVSFEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100
                        69****************************.9***************943444443456********************************* PP

                NAM  90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++ +     +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  orange1.1g046523m 101 KAIHITmanvnSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 144
                        ***998877777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-584170IPR003441NAC domain
PROSITE profilePS5100557.65810170IPR003441NAC domain
PfamPF023651.2E-2711144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMAGNGELSV PPGFRFHPTD EELLYYYLRK KVSFEAIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHITMANV NSSRRIGMRK  120
TLVFYTGRAP HGQKTDWIMH EYRLDDDEYS SSSSEVVQED GWVVCRVFKK KNHINRSYFQ  180
SEVAHEYDQE EHIISNNNNN YIMKTSATAS SAAPEPKQSR RRHLQALYHE CNSSFDGSMH  240
LPQLFSSESA VITPSFISPM ISLNNMDIEC SQNLLRLTTS ASGSGSGLMQ QAAHDQRFNG  300
DWSFLDKLLT SHVHHSAQQQ PDQINSHSKC NPSSSSTVVD HVQVASSSTH YQKFPLYYLG  360
CDAEDIMKFS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51717214167NO APICAL MERISTEM PROTEIN
1ut4_B2e-51717214167NO APICAL MERISTEM PROTEIN
1ut7_A2e-51717214167NO APICAL MERISTEM PROTEIN
1ut7_B2e-51717214167NO APICAL MERISTEM PROTEIN
3swm_A2e-51717217170NAC domain-containing protein 19
3swm_B2e-51717217170NAC domain-containing protein 19
3swm_C2e-51717217170NAC domain-containing protein 19
3swm_D2e-51717217170NAC domain-containing protein 19
3swp_A2e-51717217170NAC domain-containing protein 19
3swp_B2e-51717217170NAC domain-containing protein 19
3swp_C2e-51717217170NAC domain-containing protein 19
3swp_D2e-51717217170NAC domain-containing protein 19
4dul_A2e-51717214167NAC domain-containing protein 19
4dul_B2e-51717214167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024949461.10.0protein SOMBRERO isoform X2
SwissprotQ9MA171e-122SMB_ARATH; Protein SOMBRERO
TrEMBLA0A067F2710.0A0A067F271_CITSI; Uncharacterized protein
STRINGXP_006493793.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-108NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]