PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046419m | ||||||||
Common Name | CISIN_1g046419mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 506aa MW: 55342 Da PI: 8.0975 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l orange1.1g046419m 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +++eE+ l+v++++qlG++ W++ a+ ++ gRt++++k++w++ orange1.1g046419m 87 KGTFSPEEERLIVELHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 130 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.393 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-29 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.84E-11 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.956 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-16 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 87 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-11 | 89 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 89 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MLLGNSNGEQ LESGVGGLNV SDGSGGEGGV QLKKGPWTAA EDAILTEYVR KHGEGNWNAV 60 QRNTGLARCG KSCRLRWANH LRPNLKKGTF SPEEERLIVE LHAQLGNKWA RMAAQLPGRT 120 DNEIKNYWNT RVKRRHRQGL PLYPPEIQPQ HQHQHQHQNH QQSSHSHHSY HSQPSTPTTP 180 TSSFSFPIAA TTPTTPTGGH HQHHSLHHHF PPPCYSRSPT PSSLPPTPPP LSPGLRSPHQ 240 PAFPTLTLFD TNTNTNANNN SNAANSSVMS SNNISNTFNM PRTPPLLQNP PRFKRFHSDT 300 SINTFAANQN DINNNNNINS SSSFQGSNNF SMPFLPFFRS PSSPSLLTSP TSNCNTSAFP 360 SATTKLLSHP SFSFGNQNSS AIYRNPDEKE CILTSTGSVF NLKPELPSSQ SLSQNVNAEI 420 LRSKPKEETG GQINMHEDIS KLLNVIPSMQ VPEWYNDSGE ASNCQSSVVT DDNLGLELQQ 480 LASILHVDST TAPGSCSYDN LPGIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 32 | 135 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU921601 | 1e-135 | EU921601.1 Citrus unshiu clone GB-CU-120 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475135.1 | 0.0 | transcription factor MYB120 | ||||
TrEMBL | A0A067F9F7 | 0.0 | A0A067F9F7_CITSI; Uncharacterized protein | ||||
STRING | XP_006475135.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5100 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 9e-71 | myb domain protein 120 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046419m |