PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046329m
Common NameCISIN_1g046329mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 280aa    MW: 31405.9 Da    PI: 7.2095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046329mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.2e-06117136120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C+k+F+r  n++ H+
  orange1.1g046329m 117 FSCPVCNKTFNRYNNMQMHM 136
                        89*****************9 PP
2zf-C2H2140.00015202224123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk+F  + + ++H +++
  orange1.1g046329m 202 FGCRKCGKPFAVRGDWRTHEKNC 224
                        56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-598138No hitNo description
SMARTSM003550.025117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305117144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-7117136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128746.4E-5117136No hitNo description
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SMARTSM00355200165197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.18E-5185222No hitNo description
Gene3DG3DSA:3.30.160.606.4E-5188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQTPAPFAYI SSSEGACFEA ADEQHQDEDS IVLSLGPPGQ RVSKHSTSNQ LLARNNNHQN  60
PTSHHSGVTV ALHIGPPTTE AAGSTSNPTP NDIVNKLVEG QYWIPSPEQI LVGPTQFSCP  120
VCNKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKAVSSML RLPCYCCAEG CKNNIGHPRS  180
RPLKDFRTLQ THYKRKHGAK PFGCRKCGKP FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR  240
SLKDHVRSFG DGHAPHTVEF GREVEEDEDE DNDFDEEEDE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437731.10.0zinc finger protein WIP6
SwissprotQ9FX681e-123ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A067FRS90.0A0A067FRS9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006437731.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-125C2H2-like zinc finger protein