PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046293m
Common NameCISIN_1g046293mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 696aa    MW: 80490.7 Da    PI: 9.0318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046293mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.38e-2141128190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY++YAke GFs+++++sk  k+++ i+++++vC keg+++++k    +++r+r   r gC a+l+v k + gk++v  +++eHnH+l+
  orange1.1g046293m  41 EFYKKYAKEGGFSIQINSSKICKESNDIIRKEYVCFKEGQARQSKVV--NRKRRRGIIRGGCSANLVVVKYEFGKYMVRIFVEEHNHTLS 128
                        6***************************************9998766..899999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1841128IPR004330FAR1 DNA binding domain
PfamPF105515.1E-25209281IPR018289MULE transposase domain
PROSITE profilePS509669.94461497IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4462495IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-5472499IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MNAQNAAGQS NYEDSLYVPE VALNRKPHKG KKFDTLDDAY EFYKKYAKEG GFSIQINSSK  60
ICKESNDIIR KEYVCFKEGQ ARQSKVVNRK RRRGIIRGGC SANLVVVKYE FGKYMVRIFV  120
EEHNHTLSSP RMVHLLRSHR SMSAVQKSLS QQLAAVNIPT YILYEHFQSE KEKNSSFFYN  180
IKAGCDDRIT HCFWADAICR RAYKFYGDVI VFDTTYNTNR YNMIFAPFVG VNNHGQTIIF  240
GCGFLSDETT ESFLWLFEQF KEAMPGDDPK MIITDQDPAM ILHLAYWHIL NKFLERLSKT  300
VHTENYRHFQ KCIWESNTIE KFDALWKDVI DKAKLIENEW LQGVYEIRSK WVHAYVNHVF  360
SAGMSSSNRA ESNHAIFRRA LSQQRHEELI ADNKDLNERP MLRLPLQIEK KMSEIYTCEI  420
FYIFQDELWN SLLHAIELVK ENEDCLVYNV VNQEDGVSKV FEVLYDKKLD FVSCICKKFK  480
SEGIPCTHML ALFKKLQISF MPNIYILKRW TKAAKLERVM DRDGVEINDC SNKSILLRRT  540
KLFQFTSNVI DKVVLSEVAS EIVIENLEDA LEKVKLVMES CRSEGVLEKN SGMQQPHFNE  600
PLQIRAKGCG KRLKGGKEKA KEKAKGKDKG RRCNGCGLVG QSHDKRNCPL LIKRCHYNST  660
GALTKATKLR TNSNPNCVLI SITSLKDVEL WKHLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3369431e-166AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043082.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D7F40.0A0A067D7F4_CITSI; Uncharacterized protein
STRINGXP_006428864.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-92FAR1-related sequence 5