PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046286m

Common Name

CISIN_1g046286mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 189aa MW: 21585.5 Da PI: 9.5855

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046286m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.3	1.3e-32	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ orange1.1g046286m 109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 167 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-33	95	167	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-28	102	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.828	104	169	IPR003657	WRKY domain
SMART	SM00774	4.1E-38	109	168	IPR003657	WRKY domain
Pfam	PF03106	4.6E-26	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MEGREPHPVS SPMSPQPNYL FTPSIPSSSM QPATLEPQVL PEIDWVSLLS AQSTDHNMME 60 STSHLNPENG GGRDQQDQGC KENKRKGSRM KKATRPRFAF QTRSADDILD DGYRWRKYGQ 120 KAVKNSLYPR SYYRCTHHTC NVKKQVQRLS KDTSIVVTTY EGIHNHPCEK LMETLTPLLK 180 QMQFLARF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-25	99	166	7	74	Probable WRKY transcription factor 4
2lex_A	9e-25	99	166	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444939.1	1e-140	probable WRKY transcription factor 43
Refseq	XP_006491470.1	1e-140	probable WRKY transcription factor 43
Swissprot	Q8GY11	4e-57	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A067HEP8	1e-140	A0A067HEP8_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PH34	1e-140	A0A2H5PH34_CITUN; Uncharacterized protein
STRING	XP_006491470.1	1e-139	(Citrus sinensis)
STRING	XP_006444939.1	1e-139	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	2e-59	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Phytozome	orange1.1g046286m

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]