PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046218m
Common NameCISIN_1g046218mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 438aa    MW: 48474.1 Da    PI: 8.5941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046218mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1362.5e-42201412128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        ppG+rF Ptd+elv +yLk+k+ +k+l+  + i ++++y++ P+dL    ++eek +yfF++rd+ky++g+r+nra+ +gyWkatg d+ + 
  orange1.1g046218m  20 PPGYRFCPTDKELVLDYLKNKAMNKPLPP-NKIMDINLYNHGPQDLS---EQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIG 107
                        9*************************999.77**************7...4578899******************************98888 PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k++ +g +k+Lv+y+g  +k++kt+W+mheyr+
  orange1.1g046218m 108 R-KENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRI 141
                        7.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5011170IPR003441NAC domain
PROSITE profilePS5100547.82819170IPR003441NAC domain
PfamPF023656.6E-2420141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVSVEQQQRV AMLKYLNSFP PGYRFCPTDK ELVLDYLKNK AMNKPLPPNK IMDINLYNHG  60
PQDLSEQEEK TLYFFTPRDR KYPKGTRPNR AAGRGYWKAT GVDNIIGRKE NPIGYRKSLV  120
YYQGYPKKSK KTNWIMHEYR IDHKSPARSS TAAPHDMKLD DWVLCKVYLK DKKSDKDNRE  180
ATSINTDATS TNPSISSSIS QSPPLLMQTT YNYSNVPYVH GSTSSATPPL HQGNNNLANI  240
NHAASSSVPP LLMQTTCNYS NVPYVHGSTS SATPPLHQGN NNLANINHAA SSSVPPLLMQ  300
TTYNYSNVPY VHGSTSSATP PLHQGNNNLA NINHAASSSV PLLQSNNNVA NINLGATSSA  360
PPLQSNNNVA NINFGATSSA APPMETINCS NVMLDQQFFH DYDYTSSLFE EVWNNCLVDL  420
PVIEFPPSNF DDVKDRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-451817616171NO APICAL MERISTEM PROTEIN
1ut4_B1e-451817616171NO APICAL MERISTEM PROTEIN
1ut7_A1e-451817616171NO APICAL MERISTEM PROTEIN
1ut7_B1e-451817616171NO APICAL MERISTEM PROTEIN
4dul_A1e-451817616171NAC domain-containing protein 19
4dul_B1e-451817616171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389322.11e-180NAC transcription factor 32-like
TrEMBLA0A067ES300.0A0A067ES30_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-52NAC domain containing protein 32