PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046158m | ||||||||
Common Name | CISIN_1g046158mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 62257.3 Da PI: 8.6718 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.8 | 4.9e-111 | 163 | 536 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL+ cA+avss+d + a++lL+++++++s +gd qRla+ f+++L+ar+a+s++++ + l + + + k+ ++ l+a+k++ ++P+ k orange1.1g046158m 163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPR-KSAADMLKAYKVYLSACPFKK 253 5789***************************************************999999877666665.889****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 ++ + + ++I++ e+++++Hi+Df+i +G+QWp L+q L+ R++gpp+lRiTg++ p++g +e++eetg+rL k++++++vpfe+n ++ orange1.1g046158m 254 LAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGfrPAERIEETGRRLLKYCQRFNVPFEYNCIA 345 ************************************************************9*****************************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++++e++++e+L+++p+E+laVn+ ++ ++llde+v+++ +r++vLkl+++++P+++v + + ++n++ F++rf ea+ ++s+lfd+++++ orange1.1g046158m 346 SQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTT 437 99****************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pre+ er + Ere+ gre++nv+aceg er+er et+++W++r +aGFk++pl+++ +++ l+ + + + ++++++++++gWk+r orange1.1g046158m 438 MPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRI 529 ***********************************************************************888****************** PP GRAS 367 LvsvSaW 373 +++ S+W orange1.1g046158m 530 VFASSCW 536 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.568 | 137 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-108 | 163 | 536 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MSSVNEFLAQ NMLSDRESVL QFKKGMEEAS KFLPTGNQLI IDLESYGFST EQKEDTSRVV 60 VKVEKEEREN SPEGSRGRKN HQREDVDLDE ERSNKQSALY TEESELSDMF DKVLLLHVDS 120 NGKPTMCTKG QGEDSLLQKG QSNGSGEKSR SRKQGKRKDT VDLRTLLILC AQAVSSNDYR 180 TANELLKQIR QHSSLTGDGS QRLAHWFANG LEARMAGSGT GTKSFLMSLA PRKSAADMLK 240 AYKVYLSACP FKKLAIMFTI KMIMKVSEKA STLHIVDFGI RYGFQWPMLI QFLSMRTGGP 300 PRLRITGIEL PQPGFRPAER IEETGRRLLK YCQRFNVPFE YNCIASQNWE TIQIEDLKIN 360 PDEVLAVNSL FRFKNLLDET VDVNCPRNSV LKLIRKIKPD IFVNSIVNGS YNAPFFVTRF 420 REAIFHFSSL FDMFDTTMPR EDPERLMFER EVYGREAMNV IACEGLERVE RPETYKQWQA 480 RTIRAGFKQL PLNQELMEKL MGKLKAWYHK DFVIDQDNNW MLQGWKGRIV FASSCWVPAP 540 EL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-46 | 146 | 538 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-46 | 146 | 538 | 1 | 379 | Protein SCARECROW |
5hyz_A | 2e-46 | 167 | 536 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17867 | 0.0 | fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424855.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A067GBT7 | 0.0 | A0A067GBT7_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SGX8 | 0.0 | V4SGX8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424855.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046158m |
Publications ? help Back to Top | |||
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