PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046075m

Common Name

CISIN_1g046075mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 329aa MW: 37356.8 Da PI: 5.955

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046075m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.3e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ ++ g++R++k+c++rw +yl orange1.1g046075m 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	30.4	9e-10	68	121	1	47
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ ++++++ lG++ I +++ gRt++++k++w+++ orange1.1g046075m 68 RGRFSEEEERIIINLHSVLGNKyfsfnmhiYSIEIIYHLP-GRTDNEIKNFWNTH 121 89********************9999876667888999.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.921	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	3.21E-26	12	118	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-17	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-24	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.08E-11	17	62	No hit	No description
PROSITE profile	PS51294	10.814	67	126	IPR017930	Myb domain
SMART	SM00717	3.7E-6	67	124	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-7	68	121	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-19	70	125	IPR009057	Homeodomain-like
CDD	cd00167	2.08E-7	70	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGRSPCCDES RSLKKGPWTP EEDQKLVDYI GRHGHGSWNA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIRRGR FSEEEERIII NLHSVLGNKY FSFNMHIYSI EIIYHLPGRT DNEIKNFWNT 120 HIRKKFLQMG IDPITHKPRV DLSQFLNLPQ TLYSSPFGNL STSPFGNNNA LKLQTDATQL 180 ARIELLQNLL ELMNTSAVIP NVGNYSGALG FDNLNQPFQN VMAQATLQNP GSSPQTTGEL 240 EAQINSLSWF EAGLEQFEGL SDHDVISNEN SSYGHNIQQE CKLPPMVNAS CDETPSLSQT 300 DHHFAAYEAW EKFIDDETSD SYWKKFLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-27	13	126	5	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432792.1	0.0	transcription factor MYB39
Refseq	XP_006471607.1	0.0	transcription factor MYB39-like
TrEMBL	A0A067EDA8	0.0	A0A067EDA8_CITSI; Uncharacterized protein
STRING	XP_006471607.1	0.0	(Citrus sinensis)
STRING	XP_006432792.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-83	myb domain protein 9

Link Out ? help Back to Top
Phytozome	orange1.1g046075m