PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045987m
Common NameCISIN_1g045987mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 511aa    MW: 55554.2 Da    PI: 6.5327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045987mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.82.8e-10178230259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK  k +++        + + +  k+v+r+aed +++++tYeg+H h+
  orange1.1g045987m 178 NDGCQWRKYGQKIRKRKPMY----TLLFLE-NYYKNVQRCAEDMSILITTYEGTHSHP 230
                        8***********99988764....333333.56789*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-14162232IPR003657WRKY domain
SuperFamilySSF1182909.68E-13170232IPR003657WRKY domain
PROSITE profilePS5081113.815172232IPR003657WRKY domain
SMARTSM007742.0E-8177231IPR003657WRKY domain
PfamPF031067.2E-10178230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGEVREENER LKKMLEQIEK DYKSLQLRFF DILQKADPAK KSTNSTQYFS HDDQIMETEL  60
VSLCLGRSSS PGEAKKEERT SNNASKSSRQ NGDDEELKAS LNLALDPKIQ PSLELGVSNL  120
SPENSSEETK EEEAGDAWPP SKVLKTMRGN GDDEVSPQSN VKRARVSVRA RCDAPTLNDG  180
CQWRKYGQKI RKRKPMYTLL FLENYYKNVQ RCAEDMSILI TTYEGTHSHP LPVSATAMAS  240
TTSAAASMLL SGSSTSQPGL SSTAPTTTAA TAPNGLNFNI YDTSRTKPFY SSNSTSALFP  300
TITLDLTNPS SSFSHFNRFS SSFASNPRFP STNLNFSCSS ESTLLPTLWG NGFQAYGPYN  360
QTPNGSLSNL GKNSQEQFYQ SFMDKNQNQQ AAAASASQQA LTETLTKAMT SDPNFRSVIA  420
AAISTMVGGN ATNNGDQENF GQNLMQNNTP PNNSILSQNG KACASGYFNG LSTLNSQTGS  480
SSLLQSSLPF PIFKSSPTPT NDNNNKDQSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431098.20.0probable WRKY transcription factor 72
TrEMBLA0A067GAT50.0A0A067GAT5_CITSI; Uncharacterized protein
STRINGXP_006431098.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-72WRKY DNA-binding protein 72