PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045783m | ||||||||
Common Name | CISIN_1g045783mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25838.6 Da PI: 7.8761 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 35 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g orange1.1g045783m 35 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 85 68********.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.37E-19 | 35 | 95 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 35 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 36 | 94 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.657 | 36 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 36 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRRARGAATT TAATKQLIEP NGSAARNAAA AGKEPRYRGV RKRPWGRFAA EIRDPWKKTR 60 VWLGTFDSAE DAARAYDAAA RTLRGPKAKT NFPIHNTNVS SYYPNNNNDP FLDQRLYGSV 120 FHDIQDQQIV NPQRPTTSSM SSTVESFSGP RPPHPPQRSA NLTDGSRRYP RTPPVVPEDC 180 HSDCDSSSSV IDDDGDIALS SCRKSLLPFD LNFPPLDDVD FNGDDDLQCT ALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 36 | 101 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2858 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006452450.1 | 1e-172 | ethylene-responsive transcription factor 3 | ||||
Refseq | XP_015384727.1 | 1e-172 | ethylene-responsive transcription factor 3 | ||||
Swissprot | O80339 | 3e-58 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 3e-58 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A067FF89 | 1e-172 | A0A067FF89_CITSI; Uncharacterized protein | ||||
STRING | XP_006475008.1 | 1e-171 | (Citrus sinensis) | ||||
STRING | XP_006452450.1 | 1e-171 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 3e-34 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045783m |
Publications ? help Back to Top | |||
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