PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g045678m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 509aa MW: 58535 Da PI: 7.2063

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g045678m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	7.8e-20	99	190	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+ eYA+ +GF vr+++++ + ++g+ + r +vCs++g+r+++ + ++++r+ r+ trtgC +++v ++ ++ w+ t+++ +HnH+l+ orange1.1g045678m 99 SFFIEYARVMGFGVRRHNKRWN-TKGTLIGRIWVCSRQGFRQKKFLErEDQKREARPITRTGCGVEFRVAIKDdTSLWVCTHFNGNHNHNLT 189 59***********9988777.7788***********997665789999************999899************98 PP FAR1 91 p 91 p orange1.1g045678m 190 P 190 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-17	100	190	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.409	347	383	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	358	385	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MSSASDSETE WESRYEIHDV PDDARFSECE DGWADDERDE VATVNIPVNQ QEGEQCDQFE 60 SYTNIHGTSG TDQEGTNYRG LKSMDIVGKE FVSEAEAESF FIEYARVMGF GVRRHNKRWN 120 TKGTLIGRIW VCSRQGFRQK KFLEREDQKR EARPITRTGC GVEFRVAIKD DTSLWVCTHF 180 NGNHNHNLTP PHHVHYIRSH QRLSEAYIAA ASSLNAVGVR PSQIHEYIVE RSGGYMDVGY 240 LRKDVQNRLN YEKRRQLQES DAEACLSYLE GKRSVDPAFY YDFTINEHNR LGDLFWCDGG 300 APYTRAMFRL VRDQILQEGM LIAVEVASED NSKSFRVKKW KVSEDECRVH IQGTWDTVSC 360 TCLMMETVGI PCSHLFAVMK VENLEVIPRC MILPQWKKEA KVGVTSKVQE RCSQYYMSVE 420 ARMGSLHAAC RTLQRFAAQS SQAYELAITE IHKVSMQLEA MSCKTAKDKP KRHMGRRFEV 480 QDPVIVLTKG CRKKQKMEET FGNWKNGR*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MSSASDSETE WESRYEIHDV PDDARFSECE DGWADDERDE VATVNIPVNQ QEGEQCDQFE  60
SYTNIHGTSG TDQEGTNYRG LKSMDIVGKE FVSEAEAESF FIEYARVMGF GVRRHNKRWN  120
TKGTLIGRIW VCSRQGFRQK KFLEREDQKR EARPITRTGC GVEFRVAIKD DTSLWVCTHF  180
NGNHNHNLTP PHHVHYIRSH QRLSEAYIAA ASSLNAVGVR PSQIHEYIVE RSGGYMDVGY  240
LRKDVQNRLN YEKRRQLQES DAEACLSYLE GKRSVDPAFY YDFTINEHNR LGDLFWCDGG  300
APYTRAMFRL VRDQILQEGM LIAVEVASED NSKSFRVKKW KVSEDECRVH IQGTWDTVSC  360
TCLMMETVGI PCSHLFAVMK VENLEVIPRC MILPQWKKEA KVGVTSKVQE RCSQYYMSVE  420
ARMGSLHAAC RTLQRFAAQS SQAYELAITE IHKVSMQLEA MSCKTAKDKP KRHMGRRFEV  480
QDPVIVLTKG CRKKQKMEET FGNWKNGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015384086.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D802	0.0	A0A067D802_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006441931.1	1e-131	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18284	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-25	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	orange1.1g045678m